# DRUGseq-tools

**Repository Path**: shenglonglin/DRUGseq-tools

## Basic Information

- **Project Name**: DRUGseq-tools
- **Description**: DRUGseq-tools is a collection of bioinfomatics analysis pipelines developed at XinRui EMED to process large-scale transcriptome sequencing data generated with Plastech-seq and PHD-seq. These pipelines
- **Primary Language**: Python
- **License**: MIT
- **Default Branch**: main
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 1
- **Created**: 2025-12-11
- **Last Updated**: 2025-12-11

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README

# DRUGseq-tools
DRUGseq-tools is a collection of bioinfomatics analysis pipelines developed at XinRui EMED to process large-scale transcriptome sequencing data generated with Plastech-seq and PHD-seq. These pipelines take paired-end FASTQ files as input and generate output files which can be used for downstream data analysis as well as a summary of QC criteria.

# Installation

```
git clone https://gitee.com/seeuzhouxin/DRUGseq-tools.git
cd DRUGseq-tools
pip install .
```


Example command can be found in [quick_start](./docs/quick_start.md).

Detailed docs can be found in [manual](./docs/manual.md).